Gene Expression Commons

Citations

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Epigenetic Loss of MLH1 Expression in Normal Human Hematopoietic Stem Cell Clones is Defined by the Promoter CpG Methylation Pattern Observed by High-Throughput Methylation Specific Sequencing.
Kenyon J, Nickel-Meester G, Qing Y, Santos-Guasch G, Drake E, PingfuFu, Sun S, Bai X, Wald D, Arts E, Gerson SL.
Int J Stem Cell Res Ther. 2016;3(2). pii: 031
PMID: 27570841
Mitotic History Reveals Distinct Stem Cell Populations and Their Contributions to Hematopoiesis.
Säwén P, Lang S, Mandal P, Rossi DJ, Soneji S, Bryder D.
Cell Rep. 2016 Mar 29;14(12):2809-18. doi: 10.1016/j.celrep.2016.02.073
PMID: 26997272
Increased DNA methylation of Dnmt3b targets impairs leukemogenesis.
Schulze I, Rohde C, Scheller-Wendorff M, Bäumer N, Krause A, Herbst F, Riemke P, Hebestreit K, Tschanter P, Lin Q, Linhart H, Godley LA, Glimm H, Dugas M, Wagner W, Berdel WE, Rosenbauer F, Müller-Tidow C.
Blood. 2016 Mar 24;127(12):1575-86. doi: 10.1182/blood-2015-07-655928
PMID: 26729896
ADAR1, inosine and the immune sensing system: distinguishing self from non-self.
Liddicoat BJ, Chalk AM, Walkley CR.
Wiley Interdiscip Rev RNA. 2016 Mar-Apr;7(2):157-72. doi: 10.1002/wrna.1322
PMID: 26692549
Endogenous dendritic cells from the tumor microenvironment support T-ALL growth via IGF1R activation.
Triplett TA, Cardenas KT, Lancaster JN, Hu Z, Selden HJ, Jasso GJ, Balasubramanyam S, Chan K, Li L, Chen X, Marcogliese AN, Davé UP, Love PE, Ehrlich LI.
Proc Natl Acad Sci U S A. 2016 Feb 23;113(8):E1016-25. doi: 10.1073/pnas.1520245113
PMID: 26862168
Hoxb5 marks long-term haematopoietic stem cells and reveals a homogenous perivascular niche.
Chen JY, Miyanishi M, Wang SK, Yamazaki S, Sinha R, Kao KS, Seita J, Sahoo D, Nakauchi H, Weissman IL.
Nature. 2016 Feb 11;530(7589):223-7. doi: 10.1038/nature16943
PMID: 26863982
Essential control of early B-cell development by Mef2 transcription factors.
Herglotz J, Unrau L, Hauschildt F, Fischer M, Kriebitzsch N, Alawi M, Indenbirken D, Spohn M, Müller U, Ziegler M, Schuh W, Jäck HM, Stocking C.
Blood. 2016 Feb 4;127(5):572-81. doi: 10.1182/blood-2015-04-643270
PMID: 26660426
BloodSpot: a database of gene expression profiles and transcriptional programs for healthy and malignant haematopoiesis.
Bagger FO, Sasivarevic D, Sohi SH, Laursen LG, Pundhir S, Sønderby CK, Winther O, Rapin N, Porse BT.
Nucleic Acids Res. 2016 Jan 4;44(D1):D917-24. doi: 10.1093/nar/gkv1101
PMID: 26507857
Genome-scale definition of the transcriptional programme associated with compromised PU.1 activity in acute myeloid leukaemia.
Sive JI, Basilico S, Hannah R, Kinston SJ, Calero-Nieto FJ, Göttgens B.
Leukemia. 2016 Jan;30(1):14-23. doi: 10.1038/leu.2015.172
PMID: 26126967
Transcriptional Landscape of Cardiomyocyte Maturation.
Uosaki H, Cahan P, Lee DI, Wang S, Miyamoto M, Fernandez L, Kass DA, Kwon C.
Cell Rep. 2015 Nov 24;13(8):1705-16. doi: 10.1016/j.celrep.2015.10.032
PMID: 26586429
High expression of myocyte enhancer factor 2C (MEF2C) is associated with adverse-risk features and poor outcome in pediatric acute myeloid leukemia: a report from the Children's Oncology Group.
Laszlo GS, Alonzo TA, Gudgeon CJ, Harrington KH, Kentsis A, Gerbing RB, Wang YC, Ries RE, Raimondi SC, Hirsch BA, Gamis AS, Meshinchi S, Walter RB.
J Hematol Oncol. 2015 Oct 20;8:115. doi: 10.1186/s13045-015-0215-4
PMID: 26487643
CX3CR1 is dysregulated in blood and brain from schizophrenia patients.
Bergon A, Belzeaux R, Comte M, Pelletier F, Hervé M, Gardiner EJ, Beveridge NJ, Liu B, Carr V, Scott RJ, Kelly B, Cairns MJ, Kumarasinghe N, Schall U, Blin O, Boucraut J, Tooney PA, Fakra E, Ibrahim EC.
Schizophr Res. 2015 Oct;168(1-2):434-43. doi: 10.1016/j.schres.2015.08.010
PMID: 26285829
RNA editing by ADAR1 prevents MDA5 sensing of endogenous dsRNA as nonself.
Liddicoat BJ, Piskol R, Chalk AM, Ramaswami G, Higuchi M, Hartner JC, Li JB, Seeburg PH, Walkley CR.
Science. 2015 Sep 4;349(6252):1115-20. doi: 10.1126/science.aac7049
PMID: 26275108
Seq-ing improved gene expression estimates from microarrays using machine learning.
Korir PK, Geeleher P, Seoighe C.
BMC Bioinformatics. 2015 Sep 4;16:286. doi: 10.1186/s12859-015-0712-z
PMID: 26338512
Metabolic Damage and Premature Thymus Aging Caused by Stromal Catalase Deficiency.
Griffith AV, Venables T, Shi J, Farr A, van Remmen H, Szweda L, Fallahi M, Rabinovitch P, Petrie HT.
Cell Rep. 2015 Aug 18;12(7):1071-9. doi: 10.1016/j.celrep.2015.07.008
PMID: 26257169
Identification and characterization of an injury-induced skeletal progenitor.
Marecic O, Tevlin R, McArdle A, Seo EY, Wearda T, Duldulao C, Walmsley GG, Nguyen A, Weissman IL, Chan CK, Longaker MT.
Proc Natl Acad Sci U S A. 2015 Aug 11;112(32):9920-5. doi: 10.1073/pnas.1513066112
PMID: 26216955
Tetraspanins as therapeutic targets in hematological malignancy: a concise review.
Beckwith KA, Byrd JC, Muthusamy N.
Front Physiol. 2015 Mar 23;6:91. doi: 10.3389/fphys.2015.00091
PMID: 25852576
Tuning cytokine receptor signaling by re-orienting dimer geometry with surrogate ligands.
Moraga I, Wernig G, Wilmes S, Gryshkova V, Richter CP, Hong WJ, Sinha R, Guo F, Fabionar H, Wehrman TS, Krutzik P, Demharter S, Plo I, Weissman IL, Minary P, Majeti R, Constantinescu SN, Piehler J, Garcia KC.
Cell. 2015 Mar 12;160(6):1196-208. doi: 10.1016/j.cell.2015.02.011
PMID: 25728669
CD41 marks the initial myelo-erythroid lineage specification in adult mouse hematopoiesis: redefinition of murine common myeloid progenitor.
Miyawaki K, Arinobu Y, Iwasaki H, Kohno K, Tsuzuki H, Iino T, Shima T, Kikushige Y, Takenaka K, Miyamoto T, Akashi K.
Stem Cells. 2015 Mar;33(3):976-87. doi: 10.1002/stem.1906
PMID: 25446279
Genomic discovery of potent chromatin insulators for human gene therapy.
Liu M, Maurano MT, Wang H, Qi H, Song CZ, Navas PA, Emery DW, Stamatoyannopoulos JA, Stamatoyannopoulos G.
Nat Biotechnol. 2015 Feb;33(2):198-203. doi: 10.1038/nbt.3062
PMID: 25580597
Developmental control of polycomb subunit composition by GATA factors mediates a switch to non-canonical functions.
Xu J, Shao Z, Li D, Xie H, Kim W, Huang J, Taylor JE, Pinello L, Glass K, Jaffe JD, Yuan GC, Orkin SH.
Mol Cell. 2015 Jan 22;57(2):304-16. doi: 10.1016/j.molcel.2014.12.009
PMID: 25578878
Identification and specification of the mouse skeletal stem cell.
Chan CK, Seo EY, Chen JY, Lo D, McArdle A, Sinha R, Tevlin R, Seita J, Vincent-Tompkins J, Wearda T, Lu WJ, Senarath-Yapa K, Chung MT, Marecic O, Tran M, Yan KS, Upton R, Walmsley GG, Lee AS, Sahoo D, Kuo CJ, Weissman IL, Longaker MT.
Cell. 2015 Jan 15;160(1-2):285-98. doi: 10.1016/j.cell.2014.12.002
PMID: 25594184
Transcriptional network control of normal and leukaemic haematopoiesis.
Sive JI, Göttgens B.
Exp Cell Res. 2014 Dec 10;329(2):255-64. doi: 10.1016/j.yexcr.2014.06.021
PMID: 25014893
Senescence and apoptosis block hematopoietic activation of quiescent hematopoietic stem cells with short telomeres.
Wang J, Lu X, Sakk V, Klein CA, Rudolph KL.
Blood. 2014 Nov 20;124(22):3237-40. doi: 10.1182/blood-2014-04-568055
PMID: 25232057
Mesenchymal cells. Defining a mesenchymal progenitor niche at single-cell resolution.
Kumar ME, Bogard PE, Espinoza FH, Menke DB, Kingsley DM, Krasnow MA.
Science. 2014 Nov 14;346(6211):1258810. doi: 10.1126/science.1258810
PMID: 25395543