Gene Expression Commons

Citations

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Heme oxygenase-1 deficiency triggers exhaustion of hematopoietic stem cells.
Szade K, Zukowska M, Szade A, Nowak W, Skulimowska I, Ciesla M, Bukowska-Strakova K, Gulati GS, Kachamakova-Trojanowska N, Kusienicka A, Einwallner E, Kijowski J, Czauderna S, Esterbauer H, Benes V, L Weissman I, Dulak J, Jozkowicz A.
EMBO Rep. 2020 Feb 5;21(2):e47895. doi: 10.15252/embr.201947895
PMID: 31885181
The lysine methyltransferase SMYD2 is required for normal lymphocyte development and survival of hematopoietic leukemias.
Brown MA, Edwards MA, Alshiraihi I, Geng H, Dekker JD, Tucker HO.
Genes Immun. 2020 Feb;21(2):119-130. doi: 10.1038/s41435-020-0094-8
PMID: 32115575
Aging-associated decrease in the histone acetyltransferase KAT6B is linked to altered hematopoietic stem cell differentiation.
Khokhar ES, Borikar S, Eudy E, Stearns T, Young K, Trowbridge JJ.
Exp Hematol. 2020 Feb;82:43-52.e4. doi: 10.1016/j.exphem.2020.01.014
PMID: 32014431
Evolutionary perspective on the hematopoietic system through a colonial chordate: allogeneic immunity and hematopoiesis.
Rosental B, Raveh T, Voskoboynik A, Weissman IL.
Curr Opin Immunol. 2020 Feb;62:91-98. doi: 10.1016/j.coi.2019.12.006
PMID: 31954962
Neogenin-1 distinguishes between myeloid-biased and balanced <i>Hoxb5</i> <sup>+</sup> mouse long-term hematopoietic stem cells.
Gulati GS, Zukowska M, Noh JJ, Zhang A, Wesche DJ, Sinha R, George BM, Weissman IL, Szade K.
Proc Natl Acad Sci U S A. 2019 Dec 10;116(50):25115-25125. doi: 10.1073/pnas.1911024116
PMID: 31754028
Blind normalization of public high-throughput databases.
Ohse S, Boerries M, Busch H.
PeerJ Comput Sci. 2019;5:e231. doi: 10.7717/peerj-cs.231
PMID: 33816884
The GABA receptor GABRR1 is expressed on and functional in hematopoietic stem cells and megakaryocyte progenitors.
Zhu F, Feng M, Sinha R, Murphy MP, Luo F, Kao KS, Szade K, Seita J, Weissman IL.
Proc Natl Acad Sci U S A. 2019 Sep 10;116(37):18416-18422. doi: 10.1073/pnas.1906251116
PMID: 31451629
MicroRNA-127-3p controls murine hematopoietic stem cell maintenance by limiting differentiation.
Crisafulli L, Muggeo S, Uva P, Wang Y, Iwasaki M, Locatelli S, Anselmo A, Colombo FS, Carlo-Stella C, Cleary ML, Villa A, Gentner B, Ficara F.
Haematologica. 2019 Sep;104(9):1744-1755. doi: 10.3324/haematol.2018.198499
PMID: 30792210
Harnessing Hematopoietic Stem Cell Low Intracellular Calcium Improves Their Maintenance In Vitro.
Luchsinger LL, Strikoudis A, Danzl NM, Bush EC, Finlayson MO, Satwani P, Sykes M, Yazawa M, Snoeck HW.
Cell Stem Cell. 2019 Aug 1;25(2):225-240.e7. doi: 10.1016/j.stem.2019.05.002
PMID: 31178255
CD11a expression distinguishes infiltrating myeloid cells from plaque-associated microglia in Alzheimer's disease.
Shukla AK, McIntyre LL, Marsh SE, Schneider CA, Hoover EM, Walsh CM, Lodoen MB, Blurton-Jones M, Inlay MA.
Glia. 2019 May;67(5):844-856. doi: 10.1002/glia.23575
PMID: 30588668
Logic-Gated ROR1 Chimeric Antigen Receptor Expression Rescues T Cell-Mediated Toxicity to Normal Tissues and Enables Selective Tumor Targeting.
Srivastava S, Salter AI, Liggitt D, Yechan-Gunja S, Sarvothama M, Cooper K, Smythe KS, Dudakov JA, Pierce RH, Rader C, Riddell SR.
Cancer Cell. 2019 Mar 18;35(3):489-503.e8. doi: 10.1016/j.ccell.2019.02.003
PMID: 30889382
Thymus-specific serine protease, a protease that shapes the CD4 T cell repertoire.
Guerder S, Hassel C, Carrier A.
Immunogenetics. 2019 Mar;71(3):223-232. doi: 10.1007/s00251-018-1078-y
PMID: 30225612
HIF prolyl hydroxylase inhibitor FG-4497 enhances mouse hematopoietic stem cell mobilization via VEGFR2/KDR.
Bisht K, Brunck ME, Matsumoto T, McGirr C, Nowlan B, Fleming W, Keech T, Magor G, Perkins AC, Davies J, Walkinshaw G, Flippin L, Winkler IG, Levesque JP.
Blood Adv. 2019 Feb 12;3(3):406-418. doi: 10.1182/bloodadvances.2018017566
PMID: 30733301
BloodSpot: a database of healthy and malignant haematopoiesis updated with purified and single cell mRNA sequencing profiles.
Bagger FO, Kinalis S, Rapin N.
Nucleic Acids Res. 2019 Jan 8;47(D1):D881-D885. doi: 10.1093/nar/gky1076
PMID: 30395307
Haemopedia RNA-seq: a database of gene expression during haematopoiesis in mice and humans.
Choi J, Baldwin TM, Wong M, Bolden JE, Fairfax KA, Lucas EC, Cole R, Biben C, Morgan C, Ramsay KA, Ng AP, Kauppi M, Corcoran LM, Shi W, Wilson N, Wilson MJ, Alexander WS, Hilton DJ, de Graaf CA.
Nucleic Acids Res. 2019 Jan 8;47(D1):D780-D785. doi: 10.1093/nar/gky1020
PMID: 30395284
Oncogenic transcriptional program driven by TAL1 in T-cell acute lymphoblastic leukemia.
Tan TK, Zhang C, Sanda T.
Int J Hematol. 2019 Jan;109(1):5-17. doi: 10.1007/s12185-018-2518-z
PMID: 30145780
Complex mammalian-like haematopoietic system found in a colonial chordate.
Rosental B, Kowarsky M, Seita J, Corey DM, Ishizuka KJ, Palmeri KJ, Chen SY, Sinha R, Okamoto J, Mantalas G, Manni L, Raveh T, Clarke DN, Tsai JM, Newman AM, Neff NF, Nolan GP, Quake SR, Weissman IL, Voskoboynik A.
Nature. 2018 Dec;564(7736):425-429. doi: 10.1038/s41586-018-0783-x
PMID: 30518860
Constitutive Activation of the Canonical NF-κB Pathway Leads to Bone Marrow Failure and Induction of Erythroid Signature in Hematopoietic Stem Cells.
Nakagawa MM, Rathinam CV.
Cell Rep. 2018 Nov 20;25(8):2094-2109.e4. doi: 10.1016/j.celrep.2018.10.071
PMID: 30463008
A CHAF1B-Dependent Molecular Switch in Hematopoiesis and Leukemia Pathogenesis.
Volk A, Liang K, Suraneni P, Li X, Zhao J, Bulic M, Marshall S, Pulakanti K, Malinge S, Taub J, Ge Y, Rao S, Bartom E, Shilatifard A, Crispino JD.
Cancer Cell. 2018 Nov 12;34(5):707-723.e7. doi: 10.1016/j.ccell.2018.10.004
PMID: 30423293
Hunting for hematopoietic transcriptional networks.
Kaushansky K.
Proc Natl Acad Sci U S A. 2018 Oct 2;115(40):9818-9820. doi: 10.1073/pnas.1813863115
PMID: 30201723
Screening for genes that regulate the differentiation of human megakaryocytic lineage cells.
Zhu F, Feng M, Sinha R, Seita J, Mori Y, Weissman IL.
Proc Natl Acad Sci U S A. 2018 Oct 2;115(40):E9308-E9316. doi: 10.1073/pnas.1805434115
PMID: 30150396
Identification of the Human Skeletal Stem Cell.
Chan CKF, Gulati GS, Sinha R, Tompkins JV, Lopez M, Carter AC, Ransom RC, Reinisch A, Wearda T, Murphy M, Brewer RE, Koepke LS, Marecic O, Manjunath A, Seo EY, Leavitt T, Lu WJ, Nguyen A, Conley SD, Salhotra A, Ambrosi TH, Borrelli MR, Siebel T, Chan K, Schallmoser K, Seita J, Sahoo D, Goodnough H, Bishop J, Gardner M, Majeti R, Wan DC, Goodman S, Weissman IL, Chang HY, Longaker MT.
Cell. 2018 Sep 20;175(1):43-56.e21. doi: 10.1016/j.cell.2018.07.029
PMID: 30241615
Programmed cell removal by calreticulin in tissue homeostasis and cancer.
Feng M, Marjon KD, Zhu F, Weissman-Tsukamoto R, Levett A, Sullivan K, Kao KS, Markovic M, Bump PA, Jackson HM, Choi TS, Chen J, Banuelos AM, Liu J, Gip P, Cheng L, Wang D, Weissman IL.
Nat Commun. 2018 Aug 10;9(1):3194. doi: 10.1038/s41467-018-05211-7
PMID: 30097573
CCR8 is expressed by post-positive selection CD4-lineage thymocytes but is dispensable for central tolerance induction.
Thyagarajan HM, Lancaster JN, Lira SA, Ehrlich LIR.
PLoS One. 2018;13(7):e0200765. doi: 10.1371/journal.pone.0200765
PMID: 30024927
Where Hematopoietic Stem Cells Live: The Bone Marrow Niche.
Szade K, Gulati GS, Chan CKF, Kao KS, Miyanishi M, Marjon KD, Sinha R, George BM, Chen JY, Weissman IL.
Antioxid Redox Signal. 2018 Jul 10;29(2):191-204. doi: 10.1089/ars.2017.7419
PMID: 29113449